PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8887_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 108aa    MW: 11841.4 Da    PI: 5.6555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8887_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-075599344
                                        SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
                     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                                         WT+eE+ +l ++ +++ ++    + ++Ia ++  ++t  ++ +r 
  cra_locus_8887_iso_2_len_585_ver_3 55 DWTPEEQAILEEGLAKYSSEssivRYAKIAMHLD-NKTIRDVALRC 99
                                        7*********************************.99999999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.1E-654100IPR001005SANT/Myb domain
SuperFamilySSF466894.04E-655102IPR009057Homeodomain-like
CDDcd001671.15E-656100No hitNo description
Gene3DG3DSA:1.10.10.607.6E-556102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MDYFCPAEFS CSSASSPSSS AGVVSYNVKA PVSGIFDTSA SAVKFQPNLH GISMDWTPEE  60
QAILEEGLAK YSSESSIVRY AKIAMHLDNK TIRDVALRCR WLSVSFCY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886660.15e-29PREDICTED: uncharacterized protein LOC107421838
TrEMBLA0A068U7712e-28A0A068U771_COFCA; Uncharacterized protein
STRINGVIT_00s0226g00040.t011e-26(Vitis vinifera)